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In the simplest cases, normalization of ratings means adjusting values measured on different scales to a notionally common scale, often prior to averaging. In more complicated cases, normalization may refer to more sophisticated adjustments where the intention is to bring the entire probability distributions of adjusted values into alignment.
Gene length: Longer genes will have more fragments/reads/counts than shorter genes if transcript expression is the same. This is adjusted by dividing the FPM by the length of a feature (which can be a gene, transcript, or exon), resulting in the metric fragments per kilobase of feature per million mapped reads (FPKM). [90]
In statistics, quantile normalization is a technique for making two distributions identical in statistical properties. To quantile-normalize a test distribution to a reference distribution of the same length, sort the test distribution and sort the reference distribution.
The simplest case of a normal distribution is known as the standard normal distribution or unit normal distribution. This is a special case when μ = 0 {\textstyle \mu =0} and σ 2 = 1 {\textstyle \sigma ^{2}=1} , and it is described by this probability density function (or density): φ ( z ) = e − z 2 2 2 π . {\displaystyle \varphi (z ...
HTSeq [10] The Python script htseq-qa takes a file with sequencing reads (either raw or aligned reads) and produces a PDF file with useful plots to assess the technical quality of a run. mRIN [11] - Assessing mRNA integrity directly from RNA-Seq data.
Instance normalization (InstanceNorm), or contrast normalization, is a technique first developed for neural style transfer, and is also only used for CNNs. [26] It can be understood as the LayerNorm for CNN applied once per channel, or equivalently, as group normalization where each group consists of a single channel:
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A graphical tool for assessing normality is the normal probability plot, a quantile-quantile plot (QQ plot) of the standardized data against the standard normal distribution. Here the correlation between the sample data and normal quantiles (a measure of the goodness of fit) measures how well the data are modeled by a normal distribution. For ...