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In statistics and related fields, a similarity measure or similarity function or similarity metric is a real-valued function that quantifies the similarity between two objects. Although no single definition of a similarity exists, usually such measures are in some sense the inverse of distance metrics : they take on large values for similar ...
Analysis of similarities (ANOSIM) is a non-parametric statistical test widely used in the field of ecology. The test was first suggested by K. R. Clarke [1] as an ANOVA-like test, where instead of operating on raw data, operates on a ranked dissimilarity matrix.
Data can be binary, ordinal, or continuous variables. It works by normalizing the differences between each pair of variables and then computing a weighted average of these differences. The distance was defined in 1971 by Gower [1] and it takes values between 0 and 1 with smaller values indicating higher similarity.
The TM-score indicates the similarity between two structures by a score between (,], where 1 indicates a perfect match between two structures (thus the higher the better). [1] Generally scores below 0.20 corresponds to randomly chosen unrelated proteins whereas structures with a score higher than 0.5 assume roughly the same fold. [ 2 ]
Normalized compression distance (NCD) is a way of measuring the similarity between two objects, be it two documents, two letters, two emails, two music scores, two languages, two programs, two pictures, two systems, two genomes, to name a few.
The SMC is very similar to the more popular Jaccard index. The main difference is that the SMC has the term in its numerator and denominator, whereas the Jaccard index does not. Thus, the SMC counts both mutual presences (when an attribute is present in both sets) and mutual absence (when an attribute is absent in both sets) as matches and ...
Other variations include the "similarity coefficient" or "index", such as Dice similarity coefficient (DSC). Common alternate spellings for Sørensen are Sorenson , Soerenson and Sörenson , and all three can also be seen with the –sen ending (the Danish letter ø is phonetically equivalent to the German/Swedish ö, which can be written as oe ...
In statistics, the Jonckheere trend test [1] (sometimes called the Jonckheere–Terpstra [2] test) is a test for an ordered alternative hypothesis within an independent samples (between-participants) design. It is similar to the Kruskal-Wallis test in that the null hypothesis is that several independent samples are from the same population ...