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A version where MySQL has been replaced by PostgreSQL is called LAPP, or sometimes by keeping the original acronym, LAMP (Linux / Apache / Middleware (Perl, PHP, Python, Ruby) / PostgreSQL). [7] The LAMP bundle can be combined with many other free and open-source software packages, including: netsniff-ng for security testing and hardening
Advanced Package Tool (APT) is a free-software user interface that works with core libraries to handle the installation and removal of software on Debian and Debian-based Linux distributions. [4] APT simplifies the process of managing software on Unix-like computer systems by automating the retrieval, configuration and installation of software ...
Most Ensembl Genomes data is stored in MySQL relational databases and can be accessed by the Ensembl REST interface, the Perl API, Biomart or online. [5] Ensembl Genomes is an open project, and most of the code, tools, and data are available to the public. [6] Ensembl and Ensembl Genomes software uses an Apache 2.0 license [7] license.
The Ensembl website provides extensive information on how to install and use the API. This software can be used to access the public MySQL database, avoiding the need to download enormous datasets. The users could even choose to retrieve data from the MySQL with direct SQL queries, but this requires an extensive knowledge of the current ...
MySQL (/ ˌ m aɪ ˌ ɛ s ˌ k juː ˈ ɛ l /) [6] is an open-source relational database management system (RDBMS). [6] [7] Its name is a combination of "My", the name of co-founder Michael Widenius's daughter My, [1] and "SQL", the acronym for Structured Query Language.
dpkg is used to install, remove, and provide information about .deb packages. dpkg (Debian Package) itself is a low-level tool. APT (Advanced Package Tool), a higher-level tool, is more commonly used than dpkg as it can fetch packages from remote locations and deal with complex package relations, such as dependency resolution.
Nix package manager: Nix is a package manager for Linux and other Unix-like systems that makes package management reliable and reproducible. It provides atomic upgrades and rollbacks, side-by-side installation of multiple versions of a package, multi-user package management and easy setup of build environments;
The Yellowdog Updater Modified (YUM) is a free and open-source command-line package-management utility for computers running the Linux operating system using the RPM Package Manager. [4] Though YUM has a command-line interface, several other tools provide graphical user interfaces to YUM functionality.