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Sphinx is a documentation generator that can use Graphviz to embed graphs in documents. Terraform an infrastructure-as-code tool from Hashicorp allows output of an execution plan as a DOT resource graph; TOra a free-software database development and administration GUI, available under the GNU GPL. Trac wiki has a Graphviz plugin. [12]
DOT is a graph description language, developed as a part of the Graphviz project. DOT graphs are typically stored as files with the .gv or .dot filename extension — .gv is preferred, to avoid confusion with the .dot extension used by versions of Microsoft Word before 2007.
calltree.sh : Bash shell functions that glue together cscope, graphviz, and a sampling of dot-rendering tools to display "caller" and "callee" relationships above, below, and/or between the C functions you specify. tceetree : like calltree.sh, it connects Cscope and Graphviz, but it is an executable rather than a bash script. Go
PlantUML is an open-source tool allowing users to create diagrams from a plain text language. Besides various UML diagrams, PlantUML has support for various other software development related formats (such as Archimate, Block diagram, BPMN, C4, Computer network diagram, ERD, Gantt chart, Mind map, and WBD), as well as visualisation of JSON and YAML files.
Next to being useful for post-processing (see the next section), Inkscape is a point-and-click tool that can be used to create high-quality figures. It is a particularly easy tool for creating vector graphics, though GeoGebra and C.a.R. may be better suited for mathematical graphics. Also, Inkscape's design concepts differ in some fundamental ...
A layered drawing of a directed acyclic graph produced by Graphviz. Layered graph drawing or hierarchical graph drawing is a type of graph drawing in which the vertices of a directed graph are drawn in horizontal rows or layers with the edges generally directed downwards.
PGF/TikZ is a pair of languages for producing vector graphics (e.g., technical illustrations and drawings) from a geometric/algebraic description, with standard features including the drawing of points, lines, arrows, paths, circles, ellipses and polygons.
The fourth is a great example of how interactive graphical tools enable a worker involved in sequence analysis to conveniently execute a variety if different computational tools to explore an alignment's phylogenetic implications; or, to predict the structure and functional properties of a specific sequence, e.g., comparative modelling.