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While standard data compression tools (e.g., zip and rar) are being used to compress sequence data (e.g., GenBank flat file database), this approach has been criticized to be extravagant because genomic sequences often contain repetitive content (e.g., microsatellite sequences) or many sequences exhibit high levels of similarity (e.g., multiple genome sequences from the same species).
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Genetics compression algorithms are the latest generation of lossless algorithms that compress data (typically sequences of nucleotides) using both conventional compression algorithms and genetic algorithms adapted to the specific datatype. In 2012, a team of scientists from Johns Hopkins University published a genetic compression algorithm ...
The book is sectioned into four parts. The first part, Genetics and the Scientific Method briefly review the History of genetics and the various methods used in genetic study. The second part focus on Mendelian inheritance, the third part deals with Molecular genetics and the last section deals with Quantitative genetics and Evolutionary ...
The Encyclopedia of Genetics (ISBN 0-12-227080-0) is a print encyclopedia of genetics edited by Sydney Brenner and Jeffrey H. Miller. It has four volumes and 1,700 entries. It has four volumes and 1,700 entries.
Schull was born in Louisiana, Missouri, the first son and second child of Eugene Schull, a shoe cutter, and Edna Gertrude Davenport.Among his distant relatives there were at least three geneticists, George H. Shull, the discoverer or hybrid vigor, A. Franklin Shull, a geneticist at the University of Michigan, and Franklin Shull’s daughter, Elizabeth “Tibby” Buckley Shull Russell, a past ...
Like strict phylip format files, relaxed phylip format files can be in interleaved format and include spaces and endlines within the sequence data. The programs that use distance data, like the neighbor program that implements the neighbor-joining method, also use a simple distance matrix format the includes only the number of taxa, their names ...
Compressed Reference-oriented Alignment Map (CRAM) is a compressed columnar file format for storing biological sequences aligned to a reference sequence, initially devised by Markus Hsi-Yang Fritz et al. [1] CRAM was designed to be an efficient reference-based alternative to the Sequence Alignment Map (SAM) and Binary Alignment Map (BAM) file ...