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The most well-studied example is the Spike protein of SARS-CoV-2, which independently evolved at the same positions regardless of the underlying sublineage. [272] The most ominent examples from the pre-Omicron era were E484K and N501Y, while in the Omicron era examples include R493Q, R346X, N444X, L452X, N460X, F486X, and F490X.
Homologous sequences are paralogous if they were created by a duplication event within the genome. For gene duplication events, if a gene in an organism is duplicated, the two copies are paralogous. They can shape the structure of whole genomes and thus explain genome evolution to a large extent. Examples include the Homeobox genes in animals.
The G + S life cycle of Entamoeba is the closest common ancestor than compared to any other life cycle of unicellular organisms. Similarly, both cell systems, amoeba and cancer, use the deep homologous G + S gene module that was evolved by a common ancestor. Some parallels that they share are too close for coincidence including:
The theory of evolution explains these homologous structures: all four animals shared a common ancestor, and each has undergone change over many generations. These changes in structure have produced forelimbs adapted for different tasks. [49] The bird and the bat wing are examples of convergent evolution.
Cave paintings (such as this one from France) represent a benchmark in the evolutionary history of human cognition. Victorian naturalist Charles Darwin was the first to propose the out-of-Africa hypothesis for the peopling of the world, [40] but the story of prehistoric human migration is now understood to be much more complex thanks to twenty-first-century advances in genomic sequencing.
The example above is an example alloparalogy. Symparalogs are paralogs that evolved from gene duplication of paralogous genes in subsequent speciation events. From the example above, if the descendant with genes A1 and B underwent another speciation event where gene A1 duplicated, the new species would have genes B, A1a, and A1b.
The pattern of limb bones called pentadactyl limb is an example of homologous structures (Fig. 2e). It is found in all classes of tetrapods (i.e. from amphibians to mammals). It can even be traced back to the fins of certain fossil fishes from which the first amphibians evolved such as tiktaalik.
When homologous genes exist but are simply undetected, the emergence of these orphan genes can be explained by well-characterized phenomena such as genomic recombination, exon shuffling, gene duplication and divergence, etc. Orphan genes may also simply lack true homologues and in such cases have an independent origins via de novo gene birth ...