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For such problems, to achieve given accuracy, it takes much less computational time to use an implicit method with larger time steps, even taking into account that one needs to solve an equation of the form (1) at each time step. That said, whether one should use an explicit or implicit method depends upon the problem to be solved.
Alternatively, a few explicit solvent molecules can be added to a QM region and the rest of the solvent treated implicitly. Previous work has shown mixed results upon the addition of explicit solvent molecules to an implicit solvent. One example added up to three explicit water molecules to a QM calculation with an implicit COSMO water model.
A molecular dynamics simulation requires the definition of a potential function, or a description of the terms by which the particles in the simulation will interact. In chemistry and biology this is usually referred to as a force field and in materials physics as an interatomic potential.
The effect of explicit solute model on solute behavior in biomolecular simulations has been also extensively studied. It was shown that explicit water models affected the specific solvation and dynamics of unfolded peptides, while the conformational behavior and flexibility of folded peptides remained intact. [37] MB model.
Both implicit and explicit memory are types of long-term memory, which is defined by the transfer of information from short-term memory into long-term storage in order to create enduring memories ...
Implicit solvation (sometimes termed continuum solvation) is a method to represent solvent as a continuous medium instead of individual “explicit” solvent molecules, most often used in molecular dynamics simulations and in other applications of molecular mechanics.
Constraint algorithms are often applied to molecular dynamics simulations. Although such simulations are sometimes performed using internal coordinates that automatically satisfy the bond-length, bond-angle and torsion-angle constraints, simulations may also be performed using explicit or implicit constraint forces for these three constraints.
Static vs. dynamic. A dynamic model accounts for time-dependent changes in the state of the system, while a static (or steady-state) model calculates the system in equilibrium, and thus is time-invariant. Dynamic models typically are represented by differential equations or difference equations. Explicit vs. implicit.