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To display molecules with Jmol, your browser needs to be Java enabled. Two examples of Jmol images in a wiki are here and here. These use Jmol to show medium sized molecules with buttons to control the rotation of the molecules. The right mouse button opens a Jmol menu while the left mouse button can be used to move the image.
Jmol is computer software for molecular modelling of chemical structures in 3 dimensions. [2] It is an open-source Java viewer for chemical structures in 3D [3]. The name originated from ava (the programming language) + [mol]ecules, and also the mol file format. JSmol is an implementation in JavaScript of the functionality of Jmol. [4]
An addition that I think would be useful for the Wiki: rather than directly adding a Jmol applet in a MediaWiki page (which requires loading the applet when viewing the page), I have added the possibility to add a button opening a new window with the Jmol applet in it (the applet will only be loaded for people that want to see the molecule in 3D).
The JME Molecule Editor is a molecule editor Java applet with which users make and edit drawings of molecules and reactions (including generating substructure queries), and can display molecules within an HTML page. [1]
Note that the link is labeled "JSmol", but the parameter is |Jmol=. Subcategories. This category has the following 3 subcategories, out of 3 total. C.
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Example of Jmol coloring. The following table shows colors assigned to each element by some popular software products. Column C is the original assignment by Corey and Pauling. [3] Column K is that of Koltun's patent. [4] Column J is the color scheme used by the molecular visualizer Jmol. [9]
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