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Name Description Knots [Note 1]Links References trRosettaRNA: trRosettaRNA is an algorithm for automated prediction of RNA 3D structure. It builds the RNA structure by Rosetta energy minimization, with deep learning restraints from a transformer network (RNAformer). trRosettaRNA has been validated in blind tests, including CASP15 and RNA-Puzzles, which suggests that the automated predictions ...
Vero Software develops and distributes software for aiding the design and manufacturing processes, providing solutions [buzzword] for the tooling, production engineering, sheet metal, metal fabrication, stone and woodworking industries. The company's brands include Alphacam, Cabinet Vision, Edgecam, Machining STRATEGIST, PEPS, Radan, SMIRT ...
Nesting and CNC programming software for sheet metal fabrication SI.CUBE CAD: 5 and 4-6 axis Nesting and CNC programming software for sheet metal fabrication Libellula.HVAC CAD: 3D parametric software for air cooling Libellula.UNFOLD CAD: 3D to 2D flat development Siemens Digital Industries Software (Formerly UGS Corp, Unigraphics Solutions) $1 ...
Automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences Eukaryotes [1] FragGeneScan: Predicting genes in complete genomes and sequencing Reads: Prokaryotes, Metagenomes [2] ATGpr: Identifies translational initiation sites in cDNA sequences: Human [3] Prodigal
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An important consideration in shape nesting is to verify that the software in question actually performs true profile nesting and not just block nesting (rectangular). In block nesting an imaginary rectangle is drawn around the shape and then the rectangles are laid side-by side which actually is not profile nesting.
Constituent amino-acids can be analyzed to predict secondary, tertiary and quaternary protein structure. This list of protein structure prediction software summarizes notable used software tools in protein structure prediction, including homology modeling, protein threading, ab initio methods, secondary structure prediction, and transmembrane helix and signal peptide prediction.
High performance GPU-accelerated ab initio molecular dynamics and TD/DFT software package for very large molecular or even nanoscale systems. Runs on NVIDIA GPUs and 64-bit Linux, has heavily optimized CUDA code. Proprietary, trial licenses available PetaChem LLC: TINKER: I Yes Yes Yes Yes I I Yes Yes Software tools for molecular design-Tinker ...
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