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a) Various sources submit data, and each variation is assigned a unique submitted SNP number ID (ss#). b) dbSNP compiles identical ss# records into one reference SNP cluster (rs#) containing data from each ss#. c) Users can retrieve data for specific rs# records and analyze these variations. d) Data from dbSNP aids clinical and applied research.
Aspen Systems Inc - Aspen Cluster Management Environment (ACME) Borg, used at Google; Bright Cluster Manager, from Bright Computing; ClusterVisor, [2] from Advanced Clustering Technologies [3] CycleCloud, from Cycle Computing acquired By Microsoft; Komodor, Enterprise Kubernetes Management Platform; Dell/EMC - Remote Cluster Manager (RCM)
Software for statistical analysis of molecular evolution. It includes different tree visualization features All [27] MultiDendrograms Interactive open-source application to calculate and plot phylogenetic trees: All [28] PHYLOViZ Phylogenetic inference and data visualization for allelic/SNP sequences profiles using Minimum Spanning Trees: All ...
Single nucleotide polymorphism annotation (SNP annotation) is the process of predicting the effect or function of an individual SNP using SNP annotation tools. In SNP annotation the biological information is extracted, collected and displayed in a clear form amenable to query.
Meta databases are databases of databases that collect data about data to generate new data. They are capable of merging information from different sources and making it available in a new and more convenient form, or with an emphasis on a particular disease or organism.
The ANNOVAR software accepts text-based input files, including VCF (Variant Call Format), the gold standard for describing genetic loci. The program's main annotation script, annotate_variation.pl requires a custom input file format, the ANNOVAR input format (.avinput). Common file types can be converted to ANNOVAR input format for annotation ...
Pileup format is a text-based format for summarizing the base calls of aligned reads to a reference sequence. This format facilitates visual display of SNP /indel calling and alignment. It was first used by Tony Cox and Zemin Ning at the Wellcome Trust Sanger Institute , and became widely known through its implementation within the SAMtools ...
A SNP array can also be used to generate a virtual karyotype using software to determine the copy number of each SNP on the array and then align the SNPs in chromosomal order. [10] SNPs can also be used to study genetic abnormalities in cancer. For example, SNP arrays can be used to study loss of heterozygosity (LOH). LOH occurs when one allele ...